For a full list of publications, pre-prints and abstracts, see Laura's Google Scholar profile.
To download open access versions for free, please visit St George's Online Research Archive.
2024:
Liley J, Newnham M, Bleda M, Bunclark K, Auger W, Barbera JA, Bogaard H, Delcroix M, et al. Shared and distinct genomics of chronic thromboembolic pulmonary hypertension and pulmonary embolism. Am J Respir Crit Care Med. 2024. 209(12):1477-1485. doi: 10.1164/rccm.202307-1236OC
Tai YY, Yu Q, Tang Y, Sun W, Kelly NJ, Okawa S, Zhao J, Schwantes-An TH, et al. Allele-specific control of rodent and human lncRNA KMT2E-AS1 promotes hypoxic endothelial pathology in pulmonary hypertension. Sci Transl Med. 2024. 16(729):eadd2029. doi: 10.1126/scitranslmed.add2029
2023:
Winsvold BS, Harder AVE, Ran C, Chalmer MA, Dalmasso MC, Ferkingstad E, Tripathi KP, Bacchelli E, et al; International Consortium for Cluster Headache Genetics. Cluster headache genomewide association study and meta-analysis identifies eight loci and implicates smoking as causal risk factor. Ann Neurol. 2023. 94(4):713-726. doi: 10.1002/ana.26743
Welch CL, Aldred MA, Balachandar S, Dooijes D, Eichstaedt CA, Gräf S, Houweling AC, Machado RD, et al; ClinGen PH VCEP. Defining the clinical validity of genes reported to cause pulmonary arterial hypertension. Genet Med. 2023. 25(11):100925. doi: 10.1016/j.gim.2023.100925
Eichstaedt CA, Belge C, Chung WK, Gräf S, Grünig E, Montani D, Quarck R, Tenorio-Castano JA, et al; for PAH-ICON associated with the PVRI. Genetic counselling and testing in pulmonary arterial hypertension: a consensus statement on behalf of the International Consortium for Genetic Studies in PAH. Eur Respir J. 2023. 61(2):2201471. doi: 10.1183/13993003.01471-2022
2022:
Machado RD, Welch CL, Haimel M, Bleda M, Colglazier E, Coulson JD, Debeljak M, Ekstein J, et al. Biallelic variants of ATP13A3 cause dose-dependent childhood-onset pulmonary arterial hypertension characterised by extreme morbidity and mortality. J Med Genet. 2022. 59(9):906-911. doi: 10.1136/jmedgenet-2021-107831
Taha F, Southgate L. Molecular genetics of pulmonary hypertension in children. Curr Opin Genet Dev. 2022. 75:101936. doi: 10.1016/j.gde.2022.101936
Harbaum L, Rhodes CJ, Wharton J, Lawrie A, Karnes JH, Desai AA, Nichols WC, Humbert M, et al; U.K. National Institute for Health Research BioResource Rare Diseases Consortium, U.K. Pulmonary Arterial Hypertension Cohort Study Consortium, and U.S. Pulmonary Arterial Hypertension Biobank Consortium. Mining the plasma proteome for insights into the molecular pathology of pulmonary arterial hypertension. Am J Respir Crit Care Med. 2022. 205(12):1449-1460. doi: 10.1164/rccm.202109-2106OC
2021:
Rossi F, Crnjar A, Comitani F, Feliciano R, Jahn L, Malim G, Southgate L, Kay E, et al. Extraction and high-throughput sequencing of oak heartwood DNA: Assessing the feasibility of genome-wide DNA methylation profiling. PLoS One. 2021. 16(11):e0254971. doi: 10.1371/journal.pone.0254971
Machado RD, Southgate L. Pulmonary arterial hypertension: a deeper evaluation of genetic risk in the -omics era. Genes (Basel). 2021. 12(11):1798. doi: 10.3390/genes12111798
O'Connor E, Fourier C, Ran C, Sivakumar P, Liesecke F, Southgate L, Harder AVE, Vijfhuizen LS, et al. Genome wide association study identifies risk loci for cluster headache. Ann Neurol. 2021. 90(2):193-202. doi: 10.1002/ana.26150
Benson CE, Southgate L. The DOCK protein family in vascular development and disease. Angiogenesis. 2021. 24(3):417-433. doi: 10.1007/s10456-021-09768-8
Zhu N, Swietlik EM, Welch CL, Pauciulo MW, Hagen JJ, Zhou X, Guo Y, Karten J, et al; NIHR BioResource for Translational Research – Rare Diseases; National Cohort Study of Idiopathic and Heritable PAH, Morrell NW, Shen Y, Gräf S, Nichols WC, Chung WK. Rare variant analysis of 4241 pulmonary arterial hypertension cases from an international consortium implicates FBLN2, PDGFD, and rare de novo variants in PAH. Genome Med. 2021. 13(1):80. doi: 10.1186/s13073-021-00891-1
Swietlik EM, Greene D, Zhu N, Megy K, Cogliano M, Rajaram S, Pandya D, Tilly T, et al. Bayesian inference associates rare KDR variants with specific phenotypes in pulmonary arterial hypertension. Circ Genom Precis Med. 2021. 14(1):e003155. doi: 10.1186/s13073-021-00891-1
2020:
Gelinas SM, Benson CE, Khan MA, Berger RMF, Trembath RC, Machado RD*, Southgate L*. Whole exome sequence analysis provides novel insights into the genetic framework of childhood-onset pulmonary arterial hypertension. Genes. 2020. 11(11):1328. doi: 10.3390/genes11111328
Rhodes CJ, Otero-Núñez P, Wharton J, Swietlik EM, Kariotis S, Harbaum L, Dunning MJ, Elinoff JM, et al. Whole blood RNA profiles associated with pulmonary arterial hypertension and clinical outcome. Am J Respir Crit Care Med. 2020. 202(4):586-594. doi: 10.1164/rccm.202003-0510OC
Turro E, Astle WJ, Megy K, Gräf S, Greene D, Shamardina O, Allen HL, Sanchis-Juan A, et al; NIHR BioResource for the 100,000 Genomes Project, Kingston N, Walker N, Bradley JR, Ashford S, Penkett CJ, Freson K, Stirrups KE, Raymond FL, Ouwehand WH. Whole-genome sequencing of patients with rare diseases in a national health system. Nature. 2020. 583(7814):96-102. doi: 10.1038/s41586-020-2434-2
Thaventhiran JED, Lango Allen H, Burren OS, Rae W, Greene D, Staples E, Zhang Z, Farmery JHR, et al; Primary Immunodeficiency Consortium for the NIHR Bioresource, Lyons PA, Hurles ME, Savic S, Burns SO, Kuijpers TW, Turro E, Ouwehand WH, Thrasher AJ, Smith KGC. Whole-genome sequencing of a sporadic primary immunodeficiency cohort. Nature. 2020. 583(7814):90-95. doi: 10.1038/s41586-020-2265-1
Cuvertino S, Hartill V, Coyler A, Garner T, Nair N, Al-Gazali L, Canham N, Faundes V, et al. A restricted spectrum of missense KMT2D variants cause a multiple malformations disorder distinct from Kabuki syndrome. Genet Med. 2020. 22(5):867-877. doi: 10.1038/s41436-019-0743-3
Ulrich A, Wharton J, Thayer TE, Swietlik EM, Assad TR, Desai AA, Gräf S, Harbaum L, et al. Mendelian randomisation analysis of red cell distribution width in pulmonary arterial hypertension. Eur Respir J. 2020. 55(2):1901486. doi: 10.1183/13993003.01486-2019
Hodgson J, Swietlik EM, Salmon RM, Hadinnapola C, Nikolic I, Wharton J, Guo J, Liley J, et al. Characterisation of GDF2 mutations and levels of BMP9 and BMP10 in pulmonary arterial hypertension. Am J Respir Crit Care Med. 2020. 201(5):575-585. doi: 10.1164/rccm.201906-1141OC
Southgate L, Machado RD, Gräf S, Morrell NW. Molecular genetic framework underlying pulmonary arterial hypertension. Nat Rev Cardiol. 2020. 17(2):85-95. doi: 10.1038/s41569-019-0242-x
2019:
Gorman KM, Meyer E, Grozeva D, Spinelli E, McTague A, Sanchis-Juan A, Carss KJ, Bryant E, et al; Deciphering Developmental Disorders Study; UK10K Consortium; NIHR BioResource, Millichap JJ, Carvill GL, Clayton-Smith J, Maher ER, Raymond FL, Kurian MA. Bi-allelic loss-of-function CACNA1B mutations in progressive epilepsy-dyskinesia. Am J Hum Genet. 2019. 104(5):948-956. doi: 10.1016/j.ajhg.2019.03.005
Rhodes CJ*, Batai K*, Bleda M*, Haimel M*, Southgate L*, Germain M*, Pauciulo MW*, Hadinnapola C, et al; UK NIHR BioResource Rare Diseases Consortium; UK PAH Cohort Study Consortium; US PAH Biobank Consortium. Genetic determinants of risk in pulmonary arterial hypertension: international genome-wide association studies and meta-analysis. Lancet Respir Med. 2019. 7(3):227-238. doi: 10.1016/S2213-2600(18)30409-0
Southgate L. Current opinion in the molecular genetics of Adams-Oliver syndrome. Expert Opin Orphan Drugs. 2019. 7(1):21-26. doi: 10.1080/21678707.2019.1559049
2018:
Meester JAN, Sukalo M, Schröder KC, Schanze D, Baynam G, Borck G, Bramswig NC, Duman D, et al. Elucidating the genetic architecture of Adams-Oliver syndrome in a large European cohort. Hum Mutat. 2018. 39(9):1246-1261. doi: 10.1002/humu.23567
Ito Y, Carss KJ, Duarte ST, Hartley T, Keren B, Kurian MA, Marey I, Charles P, et al; NIHR BioResource; Care4Rare Canada Consortium, Boycott KM, Kernohan KD, Dyack S, Raymond FL. De novo truncating mutations in WASF1 cause intellectual disability with seizures. Am J Hum Genet. 2018. 103(1):144-153. doi: 10.1016/j.ajhg.2018.06.001
Whitworth J, Smith PS, Martin JE, West H, Luchetti A, Rodger F, Clark G, Carss K, et al; NIHR BioResource Rare Diseases Consortium, Tischkowitz MD, Maher ER. Comprehensive cancer-predisposition gene testing in an adult multiple primary tumor series shows a broad range of deleterious variants and atypical tumor phenotypes. Am J Hum Genet. 2018. 103(1):3-18. doi: 10.1016/j.ajhg.2018.04.013
Gräf S*, Haimel M*, Bleda M*, Hadinnapola C*, Southgate L*, Li W, Hodgson J, Liu B, et al. Identification of rare sequence variation underlying heritable pulmonary arterial hypertension. Nat Commun. 2018. 9(1):1416. doi: 10.1038/s41467-018-03672-4
Farmery JHR, Smith ML; NIHR BioResource - Rare Diseases, Lynch AG. Telomerecat: A ploidy-agnostic method for estimating telomere length from whole genome sequencing data. Sci Rep. 2018. 8(1):1300. doi: 10.1038/s41598-017-14403-y
2017:
Hadinnapola C, Bleda M, Haimel M, Screaton N, Swift AJ, Dorfmüller P, Preston SD, Southwood M, et al. Phenotypic characterisation of EIF2AK4 mutation carriers in a large cohort of patients diagnosed clinically with pulmonary arterial hypertension. Circulation. 2017. 136(21):2022-2033. doi: 10.1161/CIRCULATIONAHA.117.028351
Arno G, Carss KJ, Hull S, Zihni C, Robson AG, Fiorentino A; UK Inherited Retinal Disease Consortium, Hardcastle AJ, Holder GE, Cheetham ME, Plagnol V; NIHR BioResource - Rare Diseases Consortium, Moore AT, Raymond FL, Matter K, Balda MS, Webster AR. Biallelic mutation of ARHGEF18, involved in the determination of epithelial apicobasal polarity, causes adult-onset retinal degeneration. Am J Hum Genet. 2017. 100(2):334-342. doi: 10.1016/j.ajhg.2016.12.014
Carss KJ, Arno G, Erwood M, Stephens J, Sanchis-Juan A, Hull S, Megy K, Grozeva D, et al; NIHR-BioResource Rare Diseases Consortium, Webster AR, Raymond FL. Comprehensive rare variant analysis via whole-genome sequencing to determine the molecular pathology of inherited retinal disease. Am J Hum Genet. 2017. 100(1):75-90. doi: 10.1016/j.ajhg.2016.12.003
2016:
Southgate L. Letter regarding “Distal limb defects and aplasia cutis: Adams-Oliver syndrome”. J Hand Surg Am. 2016. 41(9):e327. doi: 10.1016/j.jhsa.2016.06.001
Southgate L, Trembath RC (July 2016). Chapter 186: ARHGAP31, DOCK6, RBPJ, EOGT, and Adams-Oliver Syndrome. In: CJ Epstein, RP Erickson, A Wynshaw-Boris (eds.) Inborn Errors of Development: The Molecular Basis of Clinical Disorders of Morphogenesis. 3rd edition. Oxford University Press, New York. pp.1203-1209. doi: 10.1093/med/9780199934522.003.0183
Narasimhan VM, Hunt KA, Mason D, Baker CL, Karczewski KJ, Barnes MR, Barnett AH, Bates C, et al. Health and population effects of rare gene knockouts in adult humans with related parents. Science. 2016. 352(6284):474-477. doi: 10.1126/science.aac8624
2015:
Dand N, Schulz R, Weale ME, Southgate L, Oakey RJ, Simpson MA, Schlitt T. Network-informed gene ranking tackles genetic heterogeneity in exome-sequencing studies of monogenic disease. Hum Mutat. 2015. 36(12):1135-1144. doi: 10.1002/humu.22906
Machado RD, Southgate L, Eichstaedt CA, Aldred MA, Austin ED, Best DH, Chung WK, Benjamin N, et al. Pulmonary arterial hypertension: a current perspective on established and emerging molecular genetic defects. Hum Mutat. 2015. 36(12):1113-1127. doi: 10.1002/humu.22904
Meester JAN, Southgate L, Stittrich AB, Venselaar H, Beekmans SJA, den Hollander N, Bijlsma EK, Helderman-van den Enden A, et al. Heterozygous loss-of-function mutations in DLL4 cause Adams-Oliver syndrome. Am J Hum Genet. 2015. 97(3):475-482. doi: 10.1016/j.ajhg.2015.07.015
Southgate L, Sukalo M, Karountzos ASV, Taylor EJ, Collinson CS, Ruddy D, Snape KM, Dallapiccola B, et al. Haploinsufficiency of the NOTCH1 receptor as a cause of Adams-Oliver syndrome with variable cardiac anomalies. Circ Cardiovasc Genet. 2015. 8(4):572-581. doi: 10.1161/CIRCGENETICS.115.001086
Sukalo M, Tilsen F, Kayserili H, Müller D, Tüysüz B, Ruddy DM, Wakeling E, Ørstavik KH, et al. DOCK6 mutations are responsible for a distinct autosomal recessive variant of Adams-Oliver syndrome associated with brain and eye anomalies. Hum Mutat. 2015. 36(6):593-598. doi: 10.1002/humu.22795
2010 – 2014:
Ormiston ML, Southgate L, Treacy C, Pepke-Zaba J, Trembath RC, Machado RD, Morrell NW. Assessment of a pulmonary origin for blood outgrowth endothelial cells by examination of identical twins harbouring BMPR2 mutation. Am J Respir Crit Care Med. 2013. 188(2):258-260. doi: 10.1164/rccm.201301-0078LE
Southgate L, Machado RD (Dec 2011). Molecular genetics of pulmonary hypertension. In: eLS 2011, John Wiley & Sons, Ltd: Chichester. doi: 10.1002/9780470015902.a0022444
Nasim MT, Ogo T, Ahmed M, Randall R, Chowdhury HM, Snape KM, Bradshaw TY, Southgate L, et al. Molecular genetic characterization of SMAD signaling molecules in pulmonary arterial hypertension. Hum Mutat. 2011. 32(12):1385-1389. doi: 10.1002/humu.21605
Southgate L*, Machado RD*, Snape KM*, Primeau M, Dafou D, Ruddy DM, Branney PA, Fisher M, et al. Gain-of-function mutations of ARHGAP31, a Cdc42/Rac1 GTPase regulator, cause syndromic cutis aplasia and limb anomalies. Am J Hum Genet. 2011. 88(5):574-585. doi: 10.1016/j.ajhg.2011.04.013
Denais C, Dent CL, Southgate L, Hoyle J, Dafou D, Trembath RC, Machado RD. Dymeclin, the gene underlying Dyggve-Melchior-Clausen syndrome, encodes a protein integral to extracellular matrix and golgi organization and is associated with protein secretion pathways critical in bone development. Hum Mutat. 2011. 32(2):231-239. doi: 10.1002/humu.21413
Southgate L, Dafou D, Hoyle J, Li N, Kinning E, Critchley P, Németh AH, Talbot K, et al. Novel SPG11 mutations in Asian kindreds and disruption of spatacsin function in the zebrafish. Neurogenetics. 2010. 11(4):379-389. doi: 10.1007/s10048-010-0243-8
Thorleifsson G, Walters GB, Hewitt AW, Masson G, Helgason A, DeWan A, Sigurdsson A, Jonasdottir A, et al. Common variants near CAV1 and CAV2 are associated with primary open-angle glaucoma. Nat Genet. 2010. 42(10):906-909. doi: 10.1038/ng.661
Soon E, Holmes AM, Treacy CM, Doughty NJ, Southgate L, Machado RD, Trembath RC, Jennings S, et al. Elevated levels of inflammatory cytokines predict survival in idiopathic and familial pulmonary arterial hypertension. Circulation. 2010. 122(9):920-927. doi: 10.1161/CIRCULATIONAHA.109.933762
2001 – 2009:
Capon F, Di Meglio P, Szaub J, Prescott NJ, Dunster C, Baumber L, Timms K, Gutin A, et al. Sequence variants in the genes for the interleukin-23 receptor (IL23R) and its ligand (IL12B) confer protection against psoriasis. Hum Genet. 2007. 122(2):201-206. doi: 10.1007/s00439-007-0397-0
Tarpey P, Thomas S, Sarvananthan N, Mallya U, Lisgo S, Talbot CJ, Roberts EO, Awan M, et al. Mutations in FRMD7, a newly identified member of the FERM family, cause X-linked idiopathic congenital nystagmus. Nat Genet. 2006. 38(11):1242-1244. doi: 10.1038/ng1893
Baumber L, Sjöstrand C, Leone M, Harty H, Bussone G, Hillert J, Trembath RC, Russell MB. A genome-wide scan and HCRTR2 candidate gene analysis in a European cluster headache cohort. Neurology. 2006. 66(12):1888-1893. doi: 10.1212/01.wnl.0000219765.95038.d7
Baumber L, Tufarelli C, Patel S, King P, Johnson CA, Maher ER, Trembath RC. Identification of a novel mutation disrupting the DNA binding activity of GCM2 in autosomal recessive familial isolated hypoparathyroidism. J Med Genet. 2005. 42(5):443-448. doi: 10.1136/jmg.2004.026898
Aldred MA, Baumber L, Hill A, Schwalbe EC, Goh K, Karwatowski W, Trembath RC. Low prevalence of MYOC mutations in UK primary open-angle glaucoma patients limits the utility of genetic testing. Hum Genet. 2004. 115(5):428-431. doi: 10.1007/s00439-004-1171-1
Morgan NV, Gissen P, Sharif SM, Baumber L, Sutherland J, Kelly DA, Aminu K, Bennett CP, et al. A novel locus for Meckel-Gruber syndrome, MKS3, maps to chromosome 8q24. Hum Genet. 2002. 111(4-5):456-461. doi: 10.1007/s00439-002-0817-0
Bois PR, Southgate L, Jeffreys AJ. Length of uninterrupted repeats determines instability at the unstable mouse expanded simple tandem repeat family MMS10 derived from independent SINE B1 elements. Mamm Genome. 2001. 12(2):104-111. doi: 10.1007/s003350010251